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Open Reading Frame Finder
Find open reading frames (ORFs) in circular RNA sequences
Enter nucleotide sequence in FASTA format
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Load Example Sequence
Enter coordinates for a subrange of the query sequence:
From:
To:
Minimal ORF length (nt):
30
75
150
300
600
Start codon to use:
"ATG" only
"ATG" and alternative initiation codons
Any sense codon
Genetic code to use:
1. Standard
2. Vertebrate Mitochondrial
3. Yeast Mitochondrial
4. Mold, Protozoan, and Coelenterate Mitochondrial and Mycoplasma/Spiroplasma
5. Invertebrate Mitochondrial
6. Ciliate Nuclear; Dasycladacean Nuclear; Hexamita Nuclear
9. Echinoderm Mitochondrial and Flatworm Mitochondrial
10. Euplotid Nuclear
11. Bacterial, Archaeal, and Plant Plastid
12. Alternative Yeast Nuclear
13. Ascidian Mitochondrial
14. Alternative Flatworm Mitochondrial
15. Blepharisma Macronuclear
16. Chlorophycean Mitochondrial
21. Trematode Mitochondrial
22. Scenedesmus obliquus Mitochondrial
23. Thraustochytrium Mitochondrial
24. Pterobranchia Mitochondrial
25. Candidate Division SR1 and Gracilibacteria
26. Pachysolen tannophilus Nuclear
27. Karyorelict Nuclear
28. Condylostoma Nuclear
29. Mesodinium Nuclear
30. Peritrich Nuclear
31. Blastocrithidia Nuclear
33. Cephalodiscidae Mitochondrial
51. Shimodaira PMG5
52. Shimodaira PMG6
53. Shimodaira PMG7
54. Shimodaira PMG8
55. Shimodaira PMG9
56. Shimodaira PMG10
57. Shimodaira PMG11
Ignore nested ORFs
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ORF Analysis Results
Selected ORF Sequence
Nucleotide Sequence:
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Copy Nucleotide Sequence
Amino Acid Sequence:
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Copy Amino Acid Sequence
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