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| circRNA ID | Gene | Gene Type | Strand (circRNA/Gene) |
circRNA Type
The back-fusion junctions (BFJs) of circRNAs from genic regions may have three possible positions relative to the nearest exon-intron boundaries of their cognate linear transcripts, giving rise to three circRNA subtypes: (1) canonical (or completely boundary) circRNAs with both BFJs aligning to exon-intron boundaries; (2) half interior (or half boundary) circRNAs with one, but not both, of the BFJs aligning to exon-intron boundaries; (3) complete interior (or non-boundary) circRNAs with both junctions appearing inside of exons or introns. Lariats are byproducts of splicing and can be regarded as variants of canonical circRNAs; for clarity, we list lariats separately here. Intergenic circRNAs, derived from intergenic regions that often encode poorly annotated noncoding transcripts, can be considered a new distinct subtype of their own. We collectively refer to complete interior, half interior, and intergenic circRNAs as noncanonical circRNAs (nc-circRNAs) to distinguish them from canonical circRNAs (c-circRNAs). 
|
Position | Length | Species |
|---|---|---|---|---|---|---|---|
| intergenic/1:212517423-212517424-212517487-212517488--/. | intergenic | Na | -/. | intergenic | 1:212517423-212517487 | 64.0 | Brown rat |
| intergenic/11:272483-272483-273331-273331--/. | intergenic | Na | -/. | intergenic | 11:272483-273331 | 848.0 | Brown rat |
| Ubc/12:36904325-36904338-36904097-36904110-+/+ | Ubc | protein_coding | +/+ | interior | 12:36904336-36904108 | 228.0 | Brown rat |
| Ubc/12:36905080-36905085-36902800-36902805-+/+ | Ubc | protein_coding | +/+ | interior | 12:36905083-36902803 | 2280.0 | Brown rat |
| Ubc/12:36904097-36904110-36903413-36903426-+/+ | Ubc | protein_coding | +/+ | interior | 12:36904097-36903413 | 684.0 | Brown rat |
| intergenic/1:212515180-212515186-212515235-212515241--/. | intergenic | Na | -/. | intergenic | 1:212515186-212515241 | 55.0 | Brown rat |
| Ubc/12:36904153-36904155-36902329-36902331-+/+ | Ubc | protein_coding | +/+ | interior | 12:36904153-36902329 | 1824.0 | Brown rat |
| Gigyf2/9:95504817-95504821-95487793-95487797-+/+ | Gigyf2 | protein_coding | +/+ | canonical (exon-exon) | 9:95504821-95487797 | 17024.0 | Brown rat |
| Ubc/12:36905009-36905022-36903185-36903198-+/+ | Ubc | protein_coding | +/+ | interior | 12:36905022-36903198 | 1824.0 | Brown rat |
| Ubb/10:47748017-47748022-47747561-47747566-+/+ | Ubb | protein_coding | +/+ | interior | 10:47748017-47747561 | 456.0 | Brown rat |