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Species: Rhesus macaque
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circRNA ID Gene Gene Type Strand (circRNA/Gene)
circRNA Type i

The back-fusion junctions (BFJs) of circRNAs from genic regions may have three possible positions relative to the nearest exon-intron boundaries of their cognate linear transcripts, giving rise to three circRNA subtypes:

(1) canonical (or completely boundary) circRNAs with both BFJs aligning to exon-intron boundaries;

(2) half interior (or half boundary) circRNAs with one, but not both, of the BFJs aligning to exon-intron boundaries;

(3) complete interior (or non-boundary) circRNAs with both junctions appearing inside of exons or introns.

Lariats are byproducts of splicing and can be regarded as variants of canonical circRNAs; for clarity, we list lariats separately here.

Intergenic circRNAs, derived from intergenic regions that often encode poorly annotated noncoding transcripts, can be considered a new distinct subtype of their own.

We collectively refer to complete interior, half interior, and intergenic circRNAs as noncanonical circRNAs (nc-circRNAs) to distinguish them from canonical circRNAs (c-circRNAs).

CircRNA Types Diagram
Position Length Species
intergenic/11:124831089-124831097-124830633-124830641-+/. intergenic Na +/. intergenic 11:124831089-124830633 456.0 Rhesus macaque
intergenic/11:124831374-124831388-124829782-124829796-+/. intergenic Na +/. intergenic 11:124831374-124829782 1592.0 Rhesus macaque
intergenic/11:124831389-124831391-124829797-124829799-+/. intergenic Na +/. intergenic 11:124831391-124829799 1592.0 Rhesus macaque
UBB/16:16008095-16008097-16008323-16008325--/- UBB protein_coding -/- interior 16:16008095-16008323 228.0 Rhesus macaque
UBB/16:16007999-16008016-16008227-16008244--/- UBB protein_coding -/- interior 16:16008016-16008244 228.0 Rhesus macaque
intergenic/11:124831395-124831405-124830483-124830493-+/. intergenic Na +/. intergenic 11:124831405-124830493 912.0 Rhesus macaque
UBB/16:16008227-16008244-16007999-16008016-+/- UBB protein_coding +/- antisense 16:16008244-16008016 228.0 Rhesus macaque
intergenic/11:124831482-124831487-124831254-124831259-+/. intergenic Na +/. intergenic 11:124831482-124831254 228.0 Rhesus macaque
intergenic/11:124831512-124831532-124830828-124830848-+/. intergenic Na +/. intergenic 11:124831512-124830828 684.0 Rhesus macaque
intergenic/11:124831389-124831391-124830025-124830027-+/. intergenic Na +/. intergenic 11:124831391-124830027 1364.0 Rhesus macaque