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| circRNA ID | Gene | Gene Type | Strand (circRNA/Gene) |
circRNA Type
The back-fusion junctions (BFJs) of circRNAs from genic regions may have three possible positions relative to the nearest exon-intron boundaries of their cognate linear transcripts, giving rise to three circRNA subtypes: (1) canonical (or completely boundary) circRNAs with both BFJs aligning to exon-intron boundaries; (2) half interior (or half boundary) circRNAs with one, but not both, of the BFJs aligning to exon-intron boundaries; (3) complete interior (or non-boundary) circRNAs with both junctions appearing inside of exons or introns. Lariats are byproducts of splicing and can be regarded as variants of canonical circRNAs; for clarity, we list lariats separately here. Intergenic circRNAs, derived from intergenic regions that often encode poorly annotated noncoding transcripts, can be considered a new distinct subtype of their own. We collectively refer to complete interior, half interior, and intergenic circRNAs as noncanonical circRNAs (nc-circRNAs) to distinguish them from canonical circRNAs (c-circRNAs). 
|
Position | Length | Species |
|---|---|---|---|---|---|---|---|
| Nfix/19:40288683-40288685-40288151-40288153-+/+ | Nfix | protein_coding | +/+ | canonical (exon-exon) | 19:40288685-40288153 | 532.0 | Brown rat |
| Ubb/10:47748452-47748469-47747996-47748013-+/+ | Ubb | protein_coding | +/+ | interior | 10:47748469-47748013 | 456.0 | Brown rat |
| intergenic/11:243790-243798-280561-280569--/. | intergenic | Na | -/. | intergenic | 11:243795-280566 | 36771.0 | Brown rat |
| Ubc/12:36904097-36904110-36903185-36903198-+/+ | Ubc | protein_coding | +/+ | interior | 12:36904109-36903197 | 912.0 | Brown rat |
| Nfix/19:40288681-40288682-40288149-40288150-+/+ | Nfix | protein_coding | +/+ | interior | 19:40288681-40288149 | 532.0 | Brown rat |
| Cdyl/17:29244967-29244972-29245625-29245630--/- | Cdyl | protein_coding | -/- | canonical (exon-exon) | 17:29244972-29245630 | 658.0 | Brown rat |
| Ubb/10:47748206-47748223-47747978-47747995-+/+ | Ubb | protein_coding | +/+ | interior | 10:47748206-47747978 | 228.0 | Brown rat |
| Hbb/1:167643032-167643033-167655840-167655841--/- | Hbb | protein_coding | -/- | partial | 1:167643032-167655840 | 12808.0 | Brown rat |
| Hba-a3/10:15816497-15816499-15828505-15828507--/- | Hba-a3 | protein_coding | -/- | intergenic | 10:15816499-15828507 | 12008.0 | Brown rat |
| Phf21a/3:98658837-98658840-98642974-98642977-+/+ | Phf21a | protein_coding | +/+ | canonical (exon-exon) | 3:98658837-98642974 | 15863.0 | Brown rat |