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Species: Rhesus macaque
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circRNA ID Gene Gene Type Strand (circRNA/Gene)
circRNA Type i

The back-fusion junctions (BFJs) of circRNAs from genic regions may have three possible positions relative to the nearest exon-intron boundaries of their cognate linear transcripts, giving rise to three circRNA subtypes:

(1) canonical (or completely boundary) circRNAs with both BFJs aligning to exon-intron boundaries;

(2) half interior (or half boundary) circRNAs with one, but not both, of the BFJs aligning to exon-intron boundaries;

(3) complete interior (or non-boundary) circRNAs with both junctions appearing inside of exons or introns.

Lariats are byproducts of splicing and can be regarded as variants of canonical circRNAs; for clarity, we list lariats separately here.

Intergenic circRNAs, derived from intergenic regions that often encode poorly annotated noncoding transcripts, can be considered a new distinct subtype of their own.

We collectively refer to complete interior, half interior, and intergenic circRNAs as noncanonical circRNAs (nc-circRNAs) to distinguish them from canonical circRNAs (c-circRNAs).

CircRNA Types Diagram
Position Length Species
intergenic/11:124829917-124829919-124830825-124830827--/. intergenic Na -/. intergenic 11:124829919-124830827 908.0 Rhesus macaque
intergenic/11:124829953-124829961-124830405-124830413--/. intergenic Na -/. intergenic 11:124829961-124830413 452.0 Rhesus macaque
intergenic/11:124831098-124831109-124830414-124830425-+/. intergenic Na +/. intergenic 11:124831109-124830425 684.0 Rhesus macaque
intergenic/11:124829881-124829895-124830561-124830575--/. intergenic Na -/. intergenic 11:124829881-124830561 680.0 Rhesus macaque
intergenic/11:124830369-124830371-124830825-124830827--/. intergenic Na -/. intergenic 11:124830371-124830827 456.0 Rhesus macaque
intergenic/11:124829782-124829796-124830462-124830476--/. intergenic Na -/. intergenic 11:124829796-124830476 680.0 Rhesus macaque
intergenic/11:124830477-124830479-124829797-124829799-+/. intergenic Na +/. intergenic 11:124830479-124829799 680.0 Rhesus macaque
intergenic/11:124830561-124830575-124829881-124829895-+/. intergenic Na +/. intergenic 11:124830561-124829881 680.0 Rhesus macaque
intergenic/11:124830825-124830827-124830597-124830599-+/. intergenic Na +/. intergenic 11:124830827-124830599 228.0 Rhesus macaque
UBB/16:16007867-16007884-16008095-16008112--/- UBB protein_coding -/- interior 16:16007875-16008103 228.0 Rhesus macaque