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Species: Rhesus macaque
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circRNA ID Gene Gene Type Strand (circRNA/Gene)
circRNA Type i

The back-fusion junctions (BFJs) of circRNAs from genic regions may have three possible positions relative to the nearest exon-intron boundaries of their cognate linear transcripts, giving rise to three circRNA subtypes:

(1) canonical (or completely boundary) circRNAs with both BFJs aligning to exon-intron boundaries;

(2) half interior (or half boundary) circRNAs with one, but not both, of the BFJs aligning to exon-intron boundaries;

(3) complete interior (or non-boundary) circRNAs with both junctions appearing inside of exons or introns.

Lariats are byproducts of splicing and can be regarded as variants of canonical circRNAs; for clarity, we list lariats separately here.

Intergenic circRNAs, derived from intergenic regions that often encode poorly annotated noncoding transcripts, can be considered a new distinct subtype of their own.

We collectively refer to complete interior, half interior, and intergenic circRNAs as noncanonical circRNAs (nc-circRNAs) to distinguish them from canonical circRNAs (c-circRNAs).

CircRNA Types Diagram
Position Length Species
intergenic/11:124829782-124829796-124831374-124831388--/. intergenic Na -/. intergenic 11:124829796-124831388 1592.0 Rhesus macaque
intergenic/11:124830918-124830932-124829782-124829796-+/. intergenic Na +/. intergenic 11:124830918-124829782 1136.0 Rhesus macaque
intergenic/11:124830555-124830560-124829875-124829880-+/. intergenic Na +/. intergenic 11:124830555-124829875 680.0 Rhesus macaque
UBB/16:16008095-16008112-16007867-16007884-+/- UBB protein_coding +/- antisense 16:16008095-16007867 228.0 Rhesus macaque
UBB/16:16008239-16008244-16007783-16007788-+/- UBB protein_coding +/- antisense 16:16008239-16007783 456.0 Rhesus macaque
MYL12B/18:64505868-64505872-64484466-64484470-+/+ MYL12B protein_coding +/+ interior 18:64505872-64484470 21402.0 Rhesus macaque
UBB/16:16008158-16008160-16008386-16008388--/- UBB protein_coding -/- interior 16:16008160-16008388 228.0 Rhesus macaque
intergenic/11:124830828-124830848-124831512-124831532--/. intergenic Na -/. intergenic 11:124830848-124831532 684.0 Rhesus macaque
intergenic/11:124830950-124830962-124831406-124831418--/. intergenic Na -/. intergenic 11:124830951-124831407 456.0 Rhesus macaque
UBB/16:16008341-16008346-16007885-16007890-+/- UBB protein_coding +/- antisense 16:16008341-16007885 456.0 Rhesus macaque