circRNA ID | Gene | Gene Type | Strand (circRNA/Gene) |
circRNA Type
The back-fusion junctions (BFJs) of circRNAs from genic regions may have three possible positions relative to the nearest exon-intron boundaries of their cognate linear transcripts, giving rise to three circRNA subtypes: (1) canonical (or completely boundary) circRNAs with both BFJs aligning to exon-intron boundaries; (2) half interior (or half boundary) circRNAs with one, but not both, of the BFJs aligning to exon-intron boundaries; (3) complete interior (or non-boundary) circRNAs with both junctions appearing inside of exons or introns. Lariats are byproducts of splicing and can be regarded as variants of canonical circRNAs; for clarity, we list lariats separately here. Intergenic circRNAs, derived from intergenic regions that often encode poorly annotated noncoding transcripts, can be considered a new distinct subtype of their own. We collectively refer to complete interior, half interior, and intergenic circRNAs as noncanonical circRNAs (nc-circRNAs) to distinguish them from canonical circRNAs (c-circRNAs). ![]() |
Position | Length | Species |
---|---|---|---|---|---|---|---|
2610008E11Rik/10:78902429-78902434-78902933-78902938--/- | 2610008E11Rik | protein_coding | -/- | interior | 10:78902434-78902938 | 504.0 | Mouse |
2610008E11Rik/10:78902969-78902974-78903253-78903258--/- | 2610008E11Rik | protein_coding | -/- | interior | 10:78902969-78903253 | 284.0 | Mouse |
2610020C07Rik/16:11035631-11035637-11035801-11035807--/+ | 2610020C07Rik | lncRNA | -/+ | antisense | 16:11035631-11035801 | 170.0 | Mouse |
2610020C07Rik/16:11035707-11035709-11036280-11036282--/+ | 2610020C07Rik | lncRNA | -/+ | antisense | 16:11035707-11036280 | 573.0 | Mouse |
2610203C22Rik/1:9695268-9695272-9695775-9695779--/- | 2610203C22Rik | lncRNA | -/- | interior | 1:9695272-9695779 | 507.0 | Mouse |
2610307P16Rik/13:28852348-28852349-28853973-28853974--/- | 2610307P16Rik | lncRNA | -/- | interior | 13:28852349-28853974 | 1625.0 | Mouse |
2610307P16Rik/13:28852348-28852351-28853973-28853976--/- | 2610307P16Rik | lncRNA | -/- | partial | 13:28852351-28853976 | 1625.0 | Mouse |
2610307P16Rik/13:28852349-28852350-28852684-28852685--/- | 2610307P16Rik | lncRNA | -/- | interior | 13:28852350-28852685 | 335.0 | Mouse |
2610307P16Rik/13:28852356-28852357-28853981-28853982--/- | 2610307P16Rik | lncRNA | -/- | interior | 13:28852356-28853981 | 1625.0 | Mouse |
2810001A02Rik/15:86098216-86098216-86098407-86098407--/- | 2810001A02Rik | lncRNA | -/- | interior | 15:86098216-86098407 | 191.0 | Mouse |