circRNA ID | Gene | Gene Type | Strand (circRNA/Gene) |
circRNA Type
The back-fusion junctions (BFJs) of circRNAs from genic regions may have three possible positions relative to the nearest exon-intron boundaries of their cognate linear transcripts, giving rise to three circRNA subtypes: (1) canonical (or completely boundary) circRNAs with both BFJs aligning to exon-intron boundaries; (2) half interior (or half boundary) circRNAs with one, but not both, of the BFJs aligning to exon-intron boundaries; (3) complete interior (or non-boundary) circRNAs with both junctions appearing inside of exons or introns. Lariats are byproducts of splicing and can be regarded as variants of canonical circRNAs; for clarity, we list lariats separately here. Intergenic circRNAs, derived from intergenic regions that often encode poorly annotated noncoding transcripts, can be considered a new distinct subtype of their own. We collectively refer to complete interior, half interior, and intergenic circRNAs as noncanonical circRNAs (nc-circRNAs) to distinguish them from canonical circRNAs (c-circRNAs). ![]() |
Position | Length | Species |
---|---|---|---|---|---|---|---|
5031439G07Rik/15:84832236-84832237-84832744-84832745--/- | 5031439G07Rik | protein_coding | -/- | interior | 15:84832237-84832745 | 508.0 | Mouse |
5031439G07Rik/15:84832402-84832407-84833049-84833054--/- | 5031439G07Rik | protein_coding | -/- | interior | 15:84832407-84833054 | 647.0 | Mouse |
5031439G07Rik/15:84832606-84832607-84833307-84833308--/- | 5031439G07Rik | protein_coding | -/- | interior | 15:84832606-84833307 | 701.0 | Mouse |
5031439G07Rik/15:84832620-84832623-84832769-84832772--/- | 5031439G07Rik | protein_coding | -/- | interior | 15:84832623-84832772 | 149.0 | Mouse |
5031439G07Rik/15:84832649-84832650-84833122-84833123--/- | 5031439G07Rik | protein_coding | -/- | interior | 15:84832650-84833123 | 473.0 | Mouse |
5031439G07Rik/15:84833794-84833800-84834910-84834916--/- | 5031439G07Rik | protein_coding | -/- | interior | 15:84833800-84834916 | 1116.0 | Mouse |
5031439G07Rik/15:84834818-84834823-84835436-84835441--/- | 5031439G07Rik | protein_coding | -/- | interior | 15:84834823-84835441 | 618.0 | Mouse |
5031439G07Rik/15:84837329-84837330-84871925-84871926--/- | 5031439G07Rik | protein_coding | -/- | partial | 15:84837330-84871926 | 34596.0 | Mouse |
5730522E02Rik/11:25905776-25905779-25905961-25905964--/- | 5730522E02Rik | protein_coding | -/- | interior | 11:25905779-25905964 | 185.0 | Mouse |
5830417I10Rik/3:88728013-88728019-88723975-88723981-+/+ | 5830417I10Rik | unprocessed_pseudogene | +/+ | interior | 3:88728013-88723975 | 4038.0 | Mouse |