circRNA ID | Gene | Gene Type | Strand (circRNA/Gene) |
circRNA Type
The back-fusion junctions (BFJs) of circRNAs from genic regions may have three possible positions relative to the nearest exon-intron boundaries of their cognate linear transcripts, giving rise to three circRNA subtypes: (1) canonical (or completely boundary) circRNAs with both BFJs aligning to exon-intron boundaries; (2) half interior (or half boundary) circRNAs with one, but not both, of the BFJs aligning to exon-intron boundaries; (3) complete interior (or non-boundary) circRNAs with both junctions appearing inside of exons or introns. Lariats are byproducts of splicing and can be regarded as variants of canonical circRNAs; for clarity, we list lariats separately here. Intergenic circRNAs, derived from intergenic regions that often encode poorly annotated noncoding transcripts, can be considered a new distinct subtype of their own. We collectively refer to complete interior, half interior, and intergenic circRNAs as noncanonical circRNAs (nc-circRNAs) to distinguish them from canonical circRNAs (c-circRNAs). ![]() |
Position | Length | Species |
---|---|---|---|---|---|---|---|
6030443J06Rik/5:22951546-22951548-22951380-22951382-+/+ | 6030443J06Rik | lncRNA | +/+ | interior | 5:22951546-22951380 | 166.0 | Mouse |
6330403K07Rik/11:70923017-70923021-70924254-70924258--/- | 6330403K07Rik | protein_coding | -/- | interior | 11:70923017-70924254 | 1237.0 | Mouse |
6330403K07Rik/11:70923116-70923117-70923585-70923586--/- | 6330403K07Rik | protein_coding | -/- | interior | 11:70923117-70923586 | 469.0 | Mouse |
6330403K07Rik/11:70923145-70923146-70923521-70923522--/- | 6330403K07Rik | protein_coding | -/- | interior | 11:70923146-70923522 | 376.0 | Mouse |
6330403K07Rik/11:70923153-70923159-70923936-70923942--/- | 6330403K07Rik | protein_coding | -/- | interior | 11:70923153-70923936 | 783.0 | Mouse |
6330403K07Rik/11:70923183-70923187-70923741-70923745--/- | 6330403K07Rik | protein_coding | -/- | interior | 11:70923187-70923745 | 558.0 | Mouse |
6330403K07Rik/11:70923570-70923571-70923820-70923821--/- | 6330403K07Rik | protein_coding | -/- | interior | 11:70923570-70923820 | 250.0 | Mouse |
6330403K07Rik/11:70923586-70923587-70924188-70924189--/- | 6330403K07Rik | protein_coding | -/- | interior | 11:70923587-70924189 | 602.0 | Mouse |
6330403K07Rik/11:70923594-70923599-70924238-70924243--/- | 6330403K07Rik | protein_coding | -/- | interior | 11:70923594-70924238 | 644.0 | Mouse |
6330403K07Rik/11:70923651-70923652-70924236-70924237--/- | 6330403K07Rik | protein_coding | -/- | interior | 11:70923652-70924237 | 585.0 | Mouse |