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Species: Mouse
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circRNA ID Gene Gene Type Strand (circRNA/Gene)
circRNA Type i

The back-fusion junctions (BFJs) of circRNAs from genic regions may have three possible positions relative to the nearest exon-intron boundaries of their cognate linear transcripts, giving rise to three circRNA subtypes:

(1) canonical (or completely boundary) circRNAs with both BFJs aligning to exon-intron boundaries;

(2) half interior (or half boundary) circRNAs with one, but not both, of the BFJs aligning to exon-intron boundaries;

(3) complete interior (or non-boundary) circRNAs with both junctions appearing inside of exons or introns.

Lariats are byproducts of splicing and can be regarded as variants of canonical circRNAs; for clarity, we list lariats separately here.

Intergenic circRNAs, derived from intergenic regions that often encode poorly annotated noncoding transcripts, can be considered a new distinct subtype of their own.

We collectively refer to complete interior, half interior, and intergenic circRNAs as noncanonical circRNAs (nc-circRNAs) to distinguish them from canonical circRNAs (c-circRNAs).

CircRNA Types Diagram
Position Length Species
1600010M07Rik/7:109626280-109626281-109630976-109630977--/- 1600010M07Rik lncRNA -/- interior 7:109626280-109630976 4696.0 Mouse
1600010M07Rik/7:109627419-109627420-109627671-109627672--/- 1600010M07Rik lncRNA -/- interior 7:109627419-109627671 252.0 Mouse
1600010M07Rik/7:109628896-109628897-109629026-109629027--/- 1600010M07Rik lncRNA -/- interior 7:109628896-109629026 130.0 Mouse
1600010M07Rik/7:109648156-109648156-109648259-109648259--/- 1600010M07Rik lncRNA -/- interior 7:109648156-109648259 103.0 Mouse
1600010M07Rik/7:109650324-109650325-109654472-109654473--/- 1600010M07Rik lncRNA -/- interior 7:109650325-109654473 4148.0 Mouse
1600010M07Rik/7:109650617-109650618-109651981-109651982--/- 1600010M07Rik lncRNA -/- interior 7:109650617-109651981 1364.0 Mouse
1600010M07Rik/7:109650658-109650660-109651964-109651966--/- 1600010M07Rik lncRNA -/- interior 7:109650658-109651964 1306.0 Mouse
1600010M07Rik/7:109650661-109650662-109651960-109651961--/- 1600010M07Rik lncRNA -/- interior 7:109650661-109651960 1299.0 Mouse
1600010M07Rik/7:109650663-109650664-109651976-109651977--/- 1600010M07Rik lncRNA -/- interior 7:109650663-109651976 1313.0 Mouse
1600010M07Rik/7:109650684-109650685-109651983-109651984--/- 1600010M07Rik lncRNA -/- interior 7:109650684-109651983 1299.0 Mouse