CATdb

Search Results

Filter Options

Reset
Active Filters:
Species: Mouse
swipe Swipe horizontally to view all data
circRNA ID Gene Gene Type Strand (circRNA/Gene)
circRNA Type i

The back-fusion junctions (BFJs) of circRNAs from genic regions may have three possible positions relative to the nearest exon-intron boundaries of their cognate linear transcripts, giving rise to three circRNA subtypes:

(1) canonical (or completely boundary) circRNAs with both BFJs aligning to exon-intron boundaries;

(2) half interior (or half boundary) circRNAs with one, but not both, of the BFJs aligning to exon-intron boundaries;

(3) complete interior (or non-boundary) circRNAs with both junctions appearing inside of exons or introns.

Lariats are byproducts of splicing and can be regarded as variants of canonical circRNAs; for clarity, we list lariats separately here.

Intergenic circRNAs, derived from intergenic regions that often encode poorly annotated noncoding transcripts, can be considered a new distinct subtype of their own.

We collectively refer to complete interior, half interior, and intergenic circRNAs as noncanonical circRNAs (nc-circRNAs) to distinguish them from canonical circRNAs (c-circRNAs).

CircRNA Types Diagram
Position Length Species
1500015A07Rik/18:61868751-61868753-61864210-61864212-+/+ 1500015A07Rik lncRNA +/+ interior 18:61868751-61864210 4541.0 Mouse
1500015L24Rik/19:20350953-20350954-20350834-20350835-+/+ 1500015L24Rik lncRNA +/+ interior 19:20350953-20350834 119.0 Mouse
1500015L24Rik/19:20352683-20352684-20350832-20350833-+/+ 1500015L24Rik lncRNA +/+ interior 19:20352683-20350832 1851.0 Mouse
1500015L24Rik/19:20356939-20356948-20356837-20356846-+/+ 1500015L24Rik lncRNA +/+ interior 19:20356948-20356846 102.0 Mouse
1500015L24Rik/19:20368034-20368037-20362092-20362095-+/+ 1500015L24Rik lncRNA +/+ interior 19:20368037-20362095 5942.0 Mouse
1500035N22Rik/5:25190993-25190998-25190846-25190851-+/+ 1500035N22Rik lncRNA +/+ partial 5:25190998-25190851 147.0 Mouse
1500035N22Rik/5:25191000-25191000-25190853-25190853-+/+ 1500035N22Rik lncRNA +/+ interior 5:25191000-25190853 147.0 Mouse
1600010M07Rik/7:109617555-109617557-109617705-109617707--/- 1600010M07Rik lncRNA -/- interior 7:109617557-109617707 150.0 Mouse
1600010M07Rik/7:109617598-109617598-109654593-109654593--/- 1600010M07Rik lncRNA -/- interior 7:109617598-109654593 36995.0 Mouse
1600010M07Rik/7:109626276-109626277-109630972-109630973--/- 1600010M07Rik lncRNA -/- interior 7:109626277-109630973 4696.0 Mouse