CATdb

Search Results

Filter Options

Reset
Active Filters:
Tissue: A375
swipe Swipe horizontally to view all data
circRNA ID Gene Gene Type Strand (circRNA/Gene)
circRNA Type i

The back-fusion junctions (BFJs) of circRNAs from genic regions may have three possible positions relative to the nearest exon-intron boundaries of their cognate linear transcripts, giving rise to three circRNA subtypes:

(1) canonical (or completely boundary) circRNAs with both BFJs aligning to exon-intron boundaries;

(2) half interior (or half boundary) circRNAs with one, but not both, of the BFJs aligning to exon-intron boundaries;

(3) complete interior (or non-boundary) circRNAs with both junctions appearing inside of exons or introns.

Lariats are byproducts of splicing and can be regarded as variants of canonical circRNAs; for clarity, we list lariats separately here.

Intergenic circRNAs, derived from intergenic regions that often encode poorly annotated noncoding transcripts, can be considered a new distinct subtype of their own.

We collectively refer to complete interior, half interior, and intergenic circRNAs as noncanonical circRNAs (nc-circRNAs) to distinguish them from canonical circRNAs (c-circRNAs).

CircRNA Types Diagram
Position Length Species
ACLY/17:41909586-41909587-41912512-41912513--/- ACLY protein_coding -/- interior 17:41909587-41912513 2926.0 Human
ACP1/2:267515-267520-267414-267419-+/+ ACP1 protein_coding +/+ interior 2:267515-267414 101.0 Human
ACP1/2:277533-277538-277337-277342-+/+ ACP1 protein_coding +/+ interior 2:277533-277337 196.0 Human
ACP1/2:278009-278013-277790-277794-+/+ ACP1 protein_coding +/+ interior 2:278009-277790 219.0 Human
ACP1/2:278127-278132-277942-277947-+/+ ACP1 protein_coding +/+ interior 2:278127-277942 185.0 Human
ACP4/19:50791002-50791003-50791419-50791420--/+ ACP4 protein_coding -/+ antisense 19:50791002-50791419 417.0 Human
ACP5/19:11576417-11576421-11576815-11576819--/- ACP5 protein_coding -/- interior 19:11576417-11576815 398.0 Human
ACSF3/16:89114485-89114489-89112089-89112093-+/+ ACSF3 protein_coding +/+ canonical (exon-exon) 16:89114485-89112089 2396.0 Human
ACSL3/2:222908979-222908988-222908745-222908754-+/+ ACSL3 protein_coding +/+ interior 2:222908988-222908754 234.0 Human
ACSL3/2:222921941-222921944-222921839-222921842-+/+ ACSL3 protein_coding +/+ interior 2:222921941-222921839 102.0 Human